2015 – 2019

 

2019
  1. Carcioppolo, N., Christy, K.R., Jenen, J.D., King, A.J., Goonewardene, J., Raftery, D.: Biomarker Profiling for Breast Cancer Detection: Translational Research to Determine Acceptance of a Novel Breast Cancer Screening Technique, Health Systems, Vol 8:44-51, 2019.
  2. Maruvada, P., Lampe, J.W., Wishart, D.S., Barupal, D., Chester, D.N., Dodd, D., Djoumbou-Feunang, Y., Dorrestein, P.C., Dragsted, L.O., Draper, J., Duffy, L.C., Dwyer, J.T., Emenaker, N.J., Feihn, O., Gerszten, R.E., Hu, F., Karp, R.W., Klurfeld, D.M., Laughlin, M.R., Little, A.R., Lynch, C.J., Moore, S.C., Nicastro, H.L., O’Brien, D.M., Ordovás, J.M., Osganian, S.K., Playdon, M., Prentice, R., Raftery, D., Reisdorph, N., Roche, H.M., Ross, S.A., Sang, S., Scalbert, A., Srinivas, P.R., Zeisel, S.H.: Perspective: Dietary Biomarkers of Intake and Exposure: Exploration with Omics Approaches, Adv. Nutr.: pii: nmz075, 2019 PMID: 31386148.
  3. Emwas, A.H., Roy R., McKay, R.T., Tenori, L., Saccenti, E., Nagana Gowda, G.A., Raftery, D., Alahmari, F., Jaremko, L., Jaremko, M., Wishart, D.S.: NMR Spectroscopy for Metabolomics Research, Metabolites 9: Art. No. 123 2019. PMCID: 6680826.
  4. Navarro, S.L, Tarkhan, A., Shojaie, A., Randolph, T.W., Gu, H., Djukovic, D., Osterbauer, K.J., Hullar, M.A., Kratz, M., Neuhouser, M.L., Lampe, P.D., Raftery, D., Lampe, J.W.: Plasma metabolomics profiles suggest beneficial effects of a low–glycemic load dietary pattern on inflammation and energy metabolism, A. J. Clin. Nutr. 110:984-992 2019. PMCID: PMC6766441.
  5. Ruohola-Baker, H., Miklas, J., Clark, E., Levy, S., Detraux, D., Leonard, A., Beussman, K., Showalter, M.,   Hofsteen, P., Yang, X., Macadangdang, J., Raftery, D., Madan,  A., Kim, D.-H., Murry, C., Fiehn, O., Sniadecki, N., Wang, Y., Smith, A., Manninenk, T., Suomalainen, A.: TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes, Nature Comm. 10, Art. 4671, 2019.  PMCID: PMC6789043.
  6. Skill, N.J., Elliott, C.M., Ceballos, B.,Saxena, R., Pepin, R., Bettcher, L., Ellensberg, M., Raftery, D., Maluccio, M.A.,  Ekser, B., Mangus, R.S., Kubal, C.A.: Metabolomic Characterization of Human Model of Liver Rejection Identifies Aberrancies Linked to Cyclooxygenase (COX) and Nitric Oxide Synthase (NOS), Annals of Transplantation 24:341-349 (2019). PMCID: PMC6582681.
  7. Li, L., Nandate, K., Hecker, J., Bentov, N., Nagana Gowda, G.A., Raftery, D., Sharma, D.: A Novel Approach to Investigating Brain Waste Removal in Humans. J Neurosurg Anesthesiol. 2019 Oct 23. PMID: 31651552.
  8. Nagana Gowda, G.A., Raftery, D.: Analysis of Coenzymes and Antioxidants in Tissue and Blood Using 1D 1H NMR Spectroscopy., Methods Mol Biol. Vol 2037:97-110, 2019 PMID: 31463841.
  9. Nagana Gowda, G.A., Raftery, D.: Analysis of Plasma, Serum, and Whole Blood Metabolites Using 1H NMR Spectroscopy., Methods Mol Biol. 2019;2037:17-34. PMID: 31463837.
  10. Nagana Gowda, G.A., Raftery, D.: Overview of NMR Spectroscopy-Based Metabolomics: Opportunities and Challenges. Methods Mol Biol. 2019;2037:3-14. PMID: 31463836.
  11. Bearden DW, Sheen DA, Simón-Manso Y, Benner BA Jr, Rocha WFC, Blonder N, Lippa KA, Beger RD, Schnackenberg LK, Sun J, Mehta KY, Cheema AK, Gu H, Marupaka R, Nagana Gowda GA, Raftery D. Metabolomics Test Materials for Quality Control: A Study of a Urine Materials Suite, Metabolites. 9(11):E270, 2019. PMID: 31703392.
  12. Pilon AC, Gu H, Raftery D, Bolzani VDS, Lopes NP, Castro-Gamboa I, Carnevale Neto F.: Mass Spectral Similarity Networking and Gas-Phase Fragmentation Reactions in the Structural Analysis of Flavonoid Glycoconjugates, Anal Chem. 91(16):10413-10423, 2019. PMID: 31313915 Erratum in PMID: 31670937.
  13. Garrison, C.B., Zhang, Y., Navarro, S.L., Randolph, T.W., Hullar, M.A., Kratz, M., Neuhouser, M.L., Raftery, D., Lampe, P.D. and Lampe, J.W.: Proteomic analysis of plasma reveals fat mass influences cancer-related pathways in healthy humans fed controlled diets differing in glycemic load, Cancer Prevention Research, 12(9):567-578, 2019. PMCID: PMC6726515
  14. Carnevale Neto, F., Andreo, M.A., Raftery, D., Lopes, J.L.C., Lopes, N.P., Castro‐Gamboa, I., Lameiro de Noronha Sales Maia, B.H., Costa, E.V. and Vessecchi, R.: Characterization of aporphine alkaloids by electrospray ionization tandem mass spectrometry and DFT calculations, Rapid Communications in Mass Spectrometry. 2019. PMID: 31330071.
  15. Gowda, G.N. and Raftery, D., NMR-Based Metabolomics, 2019.
  16. Burr, R.L., Gu, H., Cain, K., Djukovic, D., Zhang, X., Han, C., Callan, N., Raftery, D. and Heitkemper, M.: Tryptophan Metabolites in Irritable Bowel Syndrome: An Overnight Time-course Study, Journal of neurogastroenterology and motility, 25(4):551-562, 2019. PMCID: PMC6786437.
  17. You, R., Dai, J., Zhang, P., Barding, G., Raftery, D.: Dynamic Metabolic Response to Adriamycin Induced Senescence in Breast Cancer Cells, Metabolites 8(4):95, 2018. PMCID: PMC6315875.
  18. Wang, D.F., Cheng, L., Fei, Q., Gu, H., Raftery, D., Cao, B., Zhang, C., Sun, X., Yan, J., Cui, J.Y., Wang, J.: Metabolic Profiling Identifies Phospholipids as Potential Serum Biomarkers for Schizophrenia, Psychiatry Res. 272:18-29, 2018. PMID: 30579177.
  19. Dempsey, J.L., Wang, D., Siginir, G., Fei, Q., Raftery, D., Gu, H., Cui, J.Y.: Pharmacological Activation of PXR and CAR Down-Regulates Dinstinct Bile Acid-Metabolizing Intestinal Bacteria and Alters Bile Acid Homeostasis, Toxicol. Sci. 46(8):1226-1240, 2018. PMID: 30407581.
  20. Ederer, K.A., Jin, K., Bouslog, S., Wang, L., Gorman, G.S., Rowe, G.C., Abadir, P., Raftery, D., Moellering, D., Promislow, D., Jumbo-Lucioni, P., De Luca, M.: Age- and Genotype-Specific Effects of the Angiotensin-Converting Enzyme Inhibitor Lisinopril on Mitochondrial and Metabolic Parameters in Drosophila melanogaster, Int J Mol Sci 19(11): pii: E3351, 2018. PMCID: 6274988.
  21. Beger, R.D., Dunn, W.B., Bandukwala, A., Bethan, B., Broadhurst, D., Clish, C.B., Dasari, S., Derr, L.,  Evans, A., Fischer, S., Flynn, T., Hartung, T., Herrington, D., Higashi, R., Hsu, P.C., Jones, C., Kachman, M., Karuso, H., Kruppa, G., Lippa, K., Maruvada, P., Mosley, J., Ntai, I., O’Donovan, C., Playdon, M., Raftery, D., Shaughnessy, D., Souza, A., Spaeder, T., Spalholz, B., Tayyari, F., Ubhi, B., Verma, M., Walk, T., Wilson, I., Witkin, K., Bearden, D.W., Zanetti, K.A.: Towards Quality Assurance and Quality Control in Untargeted Metabolomics Studies, Metabolomics 15:4, 2019. PMCID: PMC6443086.
  22. Jasbi, P., Wang, D., Cheng, S.L., Fei, Q., Cui, J.Y., Liu, L., Wei, Y., Raftery, D., Gu, H.: Breast Cancer Detection Using Targeted Plasma Metabolomics, J Chromatogr B Analyt Technol Biomed Life Sci. 1105:26-37, 2019. PMID: 30562627.
  23. Fei, Q., Wang, D.F., Jasbi, P., Zhang, P., Nagana Gowda, G.A., Raftery, D., Gu, H.: Combining NMR and MS with Chemical Derivatization for Absolute Quantification with Reduced Matrix Effects, Anal. Chem. 91:4055-4062, 2019. PMID: 30801179.
  24. Iwaki, T., Bennion, B.G., Stenson, E.K., Lyn, J.C., Otinga, C., Djukovic, D., Raftery, D., Fei, L., Wong, H.R., Liles, W.C., Standage, S.W.: PPARα contributes to protection against metabolic and inflammatory derangements associated with acute kidney injury in experimental sepsis, Physiological Reports 7:e14078, 2019. PMCID: PMC6525329.
  25. Paudel, L., Nagana Gowda, G.A., Raftery, D.: Extractive Ratio Analysis NMR Spectroscopy for Metabolite Identification in Complex Biological Mixtures, Anal. Chem. 91:7373-7378, 2019. PMID: 31059230.
  26. Scoville, D.K.,   Li, C.Y., Wang, D.F., Demspey, J.L., Raftery, D., Mani, S., Gu, H., Cui, J.Y.: PBDEs and Gut Microbiome Modulate Metabolic Syndrome-Related Aqueous Metabolites in Mice, Drug Metab. Dispos. 46 (8):1226-1240. 2019.

2018
  1. Li, R., Grimm, S.A., Mav, D., Gu, H., Djukovic, D., Shaw, R., Merrick, A., Raftery, D., Wade, P.: Transcriptome and DNA Methylome Analysis in a Mouse Model of Diet-Induced Obesity predicts Increased Risk of Colorectal Cancer, Cell Reports, 22(3):624-37, 2018. PCMID: PMC5793878.
  2. Nagana Gowda, G.A., Djukovic, D., Bettcher, L., Gu, H., Raftery, D.: NMR-Guided Mass Spectrometry for Absolute Quantitation of Human Blood Metabolites, Anal. Chem., 90(3):2001-09, 2018. PMID: 29293320.
  3. Tayyari, F., Nagana Gowda, G.A., Olopade, O.F., Berg, R., Yang, H.H., Lee, M.P., Mittal, S., Raftery, D., Mohammed, S.I.: Altered Metabolic Profiles of Triple-Negative and Luminal A Breast Cancer Subtypes in African-American and Caucasian Women, Oncotarget, 9(14):11677-90, 2018. PCMID: PMC5837744.
  4. Ginos, B.N.R., Navarro, S.L., Schwarz, Y., Gu, H., Wang, D.F., Randolph, T.W., Shojaie, A., Kratz, M., Hullar, M.A.J., Lampe, P.D., Neuhouser, M.L., Raftery, D., Lampe, J.W.: Circulating bile acids in healthy adults respond differently to a dietary pattern characterized by whole grains, legumes and fresh fruits and vegetables compared to a diet high in refined grains and added sugars: a randomized, controlled, crossover feeding study, Metabolism 83:197-204, 2018. PMCID: PMC5960615
  5. Davis, R.J., Gonen, M., Margineantu, D.H., Handeli, S., Swanger, J., Grim, J.E., Gu, H., Raftery, D., Hockenbery, D.M., Margolin, A., Clurman B.E.: Pan-Cancer Transcriptional Signatures Predictive of Oncogenic Mutations Reveal that Fbw7 Regulates Cancer Cell Oxidative Metabolism, PNAS 115(21):5462-67, 2018. PMID: 29735700 PMCID in progress.
  6. Du, D., Gu, H., Djukovic, D., Bettcher, L., Gong, M., Zheng, W., Hu, L., Zhang, X., Zhang, R., Wang, D., Raftery, D.: Multiplatform Metabolomics Investigation of Antiadipogenic Effects on 3T3-L1 Adipocytes by a Potent Diarylheptanoid, J Proteome Res. 17(6):2092-2101, 2018. PMID:29688022.
  7. Centini, R., Tsang, M., Iwata, T., Park, H., Delrow, J., Margineantu, D., Iritani, B.M., Gu, H., Liggit, H.D., Kang, J., Kang, L., Hockenbery, D.M., Raftery, D., Iritani, B.M.: Loss of Fnip1 Alters Kidney Development Transcriptional Program and Synergizes with TSC1 Loss to Promote mTORC1 Activation and Renal Cyst Formation, PLOS One 13(6): e0197973, 2018. PMCID: PMC5999084
  8. Nagana Gowda, G.A., Barding Jr., G.A., Dai, J., Gu, H., Margineantu, D.H., Hockenbery, D.M., Raftery, D.: A Metabolomics Study of BPTES Altered Metabolism in Human Breast Cancer Cell Lines, Frontiers Mol. Biosci. 5:49, 2018. PMCID: PMC5962734
  9. Nadjsombati, M.S., McGinty, J.W., Lyons-Cohen, M.R., Jaffe, J.B., DiPeso, L., Schneider, C., Miller, C.N., Pollack, J.L., Nagana Gowda G.A., Erle, D.J. Anderson, M.S., Locksley, R.M., Raftery, D. von Moltke, J.: Detection of Succinate by Intestinal Tuft Cells Triggers a Type 2 Innate Immune Circuit, Immunity 49(1):33, 2018. PMCID: PMC6084797.
  10. Shao, D., Villet, O., Zhang, Z., Choi, S.W., Yan, J., Ritterhoff, J., Gu, H., Djukovic, D., Christodoulou, D., Kolwicz, S.C., Raftery, D., Tian, R.: Glucose Promotes Cell Growth by Suppressing Branched-Chain Amino Acid Degradation, Nature Comm. 9:2935, 2018, PCMID: PMC6062555.
  11. Li, C.Y., Dempsey, J., Wang, D.F., Lee, S.,Weigel, K.M., Fei, Q., Bhatt, D.K., Prasad, B., Raftery, D., Gu, H., Cui, J.Y.: PBDEs Profoundly Alter Gut Microbiome and Increase Unconjugated Bile Acids in A Microbiota-dependent Manner, Drug Metabol Disposition 46(8):1226-1240, 2018. PMCID: PMC6053593
  12. Lohavanichbutr. P., Zhang. Y., Wang. P., Gu, H., Nagana Gowda, G.A., Djukovic, D., Buas, M.F., Raftery, D., Chen, C.: Salivary Metabolite Profiling Distinguishes Patients with Oral Cavity Squamous Cell Carcinoma from Normal Controls, PLoS One 13(():e0204249, 2018. PMCID: PMC6147497
  13. Roshanravan, B., Zelnick, L.R., Djucovic, D., Gu, H., Alvarez, J.A., Ziegler, T.R., Gamboa, J.L., Utzschneider, K., Kestenbaum, B., Himmelfarb, J., Kahn, S.E., Raftery, D., de Boer, I.H.: Chronic Kidney Disease Attenuates the Plasma Metabolome Response to Insulin. Chronic kidney disease attenuates the plasma metabolome response to insulin, JCI Insight. 23(16):pii122219, 2018. PCMID: PMC6141172

2017
  1. Hallan, S., Afkarian, M., Zelnick, L.R., Kestenbaum, B., Sharma, S., Saito, R., Darshi, M., Barding, G., Raftery, D., Ju, W., Kretzler, M., Sharma, K., de Boer I.H., Metabolomics and Gene Expression Analysis Reveal Down-regulation of the Citric Acid (TCA) Cycle in Non-diabetic CKD Patients. EBioMedicine. 26: 68-77, 2017. PMID: 29128444
  2. Nagana Gowda, G.A., Raftery, D., Recent Advances in NMR-Based Metabolomics, Anal. Chem. 89: 490-510, 2017.
  3. Lampe, J.W., Huang, Y., Neuhouser, M.L., Tinker, L.F., Song, X., Schoeller, D.A., Kim, S., Raftery, D., Di, C.Z., Zheng, C., Schwarz, Y., Van Horn, L., Thomson, C.A., Mossavar-Rahmani, Y., Beresford, S.A.A., Prentice, R.: Dietary Biomarker Evaluation in a Controlled Feeding Study in Women from the Women’s Health Initiative Cohort, Am. J. Clin. Nutr. 105:466-75, 2017. PMID:  28031191.
  4. Buas, M.F., Gu, H., Djukovic, D., Zhu, J., Onstad, L., Reid, B.J., Raftery, D., Vaughan., T.L.: Identification of Novel Candidate Serum Metabolite Biomarkers for Distinguishing between Gastro-Esophageal Reflux Disease, Barrett’s Esophagus, and High-Grade Dysplasia/Esophageal Adenocarcinoma. Metabolomics, 13:27, 2017. PMCID: PMC5295138.
  5. Rabinowitz, J.S., Robitaille, A.M., Wang, Y., Ray, C.A., Thummel, R., Gu, H., Djukovic, D., Raftery, D., Berndt, J.D., Moon, R.T., Genomic and metabolomic landscape of positional memory in the zebrafish caudal fin, Proc. Nat. Acad. Sci. USA 114:E717-26, 2017. PMCID: PMC5293114.
  6. Parent, B.A., Seaton, M., Djukovic, D., Gu, H., Wheelock, B., Navarro, S.L., Raftery, D., O’Keefe, G.E.: Parenteral and Enteral Nutrition in Surgical Critical Care: Plasma Metabolomics Demonstrates Divergent Effects on Nitrogen, Fatty-acid, Ribonucleotide, and Oxidative Metabolism. J. Trauma Acute Care Surg. 82:704-13, 2017. PMCID: PMC5360523.
  7. Li, T. Zhang, Z., Kolwicz, Jr. , S.C., Abell, L., Roe, N.D., Kim, M., Zhou, B., Cao, Y., Ritterhoff, J., Gu, H., Raftery, D., Sun, H., Tian, R., Defective Branched-Chain Amino Catabolism Disrupts Glucose Metabolism and Sensitizes the Heart to Ischemia-reperfusion Injury. Cell metabolism. 25:374-385, 2017. NIHMSID: NIHMS830005
  8. Nagana Gowda, G.A., Raftery, D.: Whole Blood Metabolomics by 1H NMR Spectroscopy Provides a New Opportunity to Evaluate Coenzymes and Antioxidants, Anal. Chem. 89:4620-27, 2017. PMCID: PMC6245939.
  9. Chao, J.R., Knight, K., Engel, A.L., Jankowski, C., Wang, Y., Mansonb, M.A., Gu, H., Djukovic, D., Raftery, D., Hurley, J.B., Du, J., Human Retinal Pigment Epithelium Cells prefers proline as a nutrient and transports metabolic intermediates to the retinal side. J. Biol. Chem. 292:12895-905, 2017. PMCID: PMC5546030.
  10. Miles, F.L., Navarro, S.L., Schwarz, Y., Gu, H., Djukovic, D., Randolph, T.W., Shojaie, A., Kratz, M., Hullar, M.A.J., Lampe, P.D., Neuhouser, M.L., Raftery, D., Lampe, J., Urinary Enterolactone Associated Changes in Plasma Metabolites, Food and Function, 8(9):3209-3218, 2017. PMCID: PMC5607107.

2016
  1. Emwas, A.-H., Roy, R., McKay, R., Ryan, D., Brennan, L., Tenori, L., Luchinat, C., Gao, X., Zeri, A.C., Nagana Gowda, G.A., Raftery, D., Steinbeck, C., Salek, R., Wishart, D.: Recommendations and Standardization of Biomarker Quantification Using NMR-based Metabolomics with Particular Focus on Urinary Analysis, J. Proteome Res., 15:360-373, 2016. PMID: 26745651
  2. Du, J., Rountree, A., Cleghorn, W.M., Contreras, L., Lindsay, K.J., Sadilek, M., Gu, H., Djukovic, D., Raftery, D., Satrustegui, J., Kanow, M., Chan, L., Tsang, S.H., Sweet, I.R., Hurley, J.B.: Phototransduction Influences Metabolic Flux and Nucleotide Metabolism in Mouse Retina. J. Biol. Chem. 291:4698-4710, 2016. PMCID: PMC4813492
  3. Buas, M.F., Gu, H., Djukovic, D., Zhu, J., Urban, N., Raftery, D., Li, C.I.: Identification of Novel Candidate Plasma Metabolite Biomarkers for Distinguishing Serous Ovarian Carcinoma and Benign Serous Ovarian Tumors,Gynecol. Oncol. 40:138-44, 2016. PMID: 26521694.
  4. Heitkemper, M.M., Han, C.J., Jarrett, M.E., Gu, H., Djukovic, D., Shulman, R.J., Raftery, D., Cain, K.C.: Night-time Serum Tryptophan Metabolite Levels during Sleep in Patients with and without Irritable Bowel Syndrome (IBS). Biol. Res. Nursing. 18:193-198, 2016. PMID: 25156003
  5. Lim, S.O., Li, C.W., Xia, W., Lee, H.H., Chang, S.S., Shen, J., Hsu, J.L., Raftery, D., Djukovic, D., Gu, H., Chang, W.C., Wang, H.L., Chen, M.L., Huo, L., Chen, C.H., Wu, Y., Sahin, A., Hanash, S.M., Hortobagyi, G.N., Hung, M.C.: EGFR Signaling Enhances Aerobic Glycolysis in Triple Negative Breast Cancer Cells to Promote Tumor Growth and Immune Escape., Cancer Res. 76:1284-96, 2016. PCMID: PMC4775355
  6. Chiao, Y.A., Kolwicz, S.C., Basisty, N., Gagnidze, A., Zhang, J., Gu, H., Djukovic, D., Beyer, R.P., Raftery, D., MacCoss, M., Tian, R., Rabinovitch, P.S., Rapamycin Transiently Induces Mitochondrial Remodeling to Reprogram Energy Metabolism in Old Hearts, Aging, 8:314-27, 2016. PMCID: PMC4789585
  7. Nagana Gowda, G.A., Abell, L., Lee, C.F., Tian, R., Raftery, D.: Simultaneous Analysis of Major Coenzymes of Cellular Redox Reactions and Energy Using Ex Vivo 1H NMR Spectroscopy, Anal. Chem. 88:4817-24, 2016. PMCID: PMC4857157
  8. Parent, B.A., Sood, R.F., Seaton, M., Gu, H., Djukovic, D., Raftery, D., O’Keefe, G.E., Metabolomics: a Novel Method to Trend Recovery and Therapy after Injury in Critically-Ill Trauma Patients, JAMA Surg. 151:e160853, 2016. PMID: 27223119.
  9. Zhou, X., Zheng, W., Nagana GowdaG.A., Raftery, D., Donkin, S.S., Bequette, B., Teegarden, D.: 1,25-Dihydroxyvitamin D Inhibits Glutamine Metabolism in Harvey-ras Transformed MCF10A Human Breast Epithelial Cells, J. Steroid Biochem Mol. Biol., 163:147-56, 2016. PMID: 2714413.
  10. Navarro, S.L., Randolph, T.W., Shireman, L.M., Raftery, D., McCune, J.S.: Pharmacometabonomic Prediction of Busulfan Clearance in Hematopoietic Cell Transplant Recipients, J. Proteome Res. 15:2802-11, 2016. PMID: 27350098
  11. Deng, L., Gu, H., Zhu, J., Nagana Gowda, G.A., Djukovic, D., Chiorean, E.G., Raftery, D.: Combining NMR and LC-MS Using Backward Variable Elimination: Metabolomics Analysis of Colon Cancer, Polyps and Healthy Controls, Anal. Chem. 88:7975-83, 2016. PMID: 27437783.
  12. Markley, J.L., Bruschweiler, R., Edison, A.S., Eghbalnia, H.R., Powers, R., Raftery, D., Wishart, D.S.: The Future of NMR-Based Metabolomics, Curr. Opin. Biotech. 43:34-40, 2016. PMID: 27580257
  13. Neto, F.C., Pilon, A.C., Selegato, D.M., Gu, H., Freire, R.T., Raftery, D., Lopes, N.P., Castro-Gamboa, I.: Dereplication of Natural Products using GC-TOF Mass Spectrometry: Improved Metabolite Identification by Spectral Deconvolution Ratio Analysis, Frontiers Mol. Biosci., 3, Art. 59. 2016. PMCID: PMC5044510.
  14. Gu, H., Du, J., Carroll, P.A., Zhu, J., Carnevale Neto, F., Eisenman, R.N., Raftery, D.: Quantitative Methods to Investigate the Balance between Metabolism and Proteome Biomass: Starting from Glycine, Angewandte Chem, 55, 15646, 2016. PMCID: PMC6238948.

2015
  1. Carroll, P., Diolaiti, D., McFerrin, L., Gu, H., Djukovic, D., Du, D., Cheng, P.F., Anderson, S., Ulrich, M., Hurley, J.B., Raftery, D., Ayer, D.E., Eisenman, R.N.: Deregulated Myc Requires MondoA/Mlx for Metabolic Reprogramming and Tumorigenesis. Cancer Cell 27:271-285, 2015. PMCID: PMC4326605.
  2. Sperber, H., Mathieu, J., Wang, Y., Ferreccio, A., Hesson, J., Xu, Z., Fischer, K.A., Devi, A., Detraux, D., Gu, H., Battle, S.L., Showalter, M., Valensis, C., Bielas, J.H., Ericson, N.G., Margaretha, L., Robitaille, A.M., Margineantu, D., Fiehn, O.,  Hockenbery, D., Blau, C.A., Raftery, D., Margolin, A., Hawkins, R.D., Moon, R.T., Ware, C.B., and  Ruohola-Baker, H.: The Metabolic Enzyme, Nicotinamide N-Methyltransferase Regulates the Epigenetic Landscape during Naïve to Primed Human Embryonic Stem Cell Transition, Nature Cell Biol. 17:1523-1535, 2015. PMCID: PMC4662931.
  3. Gu, H., Zhang, P., Raftery, D.: Globally Optimized Targeted Mass Spectrometry (GOT-MS): Reliable Metabolomics Analysis with Broad Coverage, Anal. Chem., 87:12355-12362, 2015.PMCID: PMC5437843.
  4. Reyes, N.L., Banks, G.B., Tsang, M., Margineantu, D., Gu, H., Chan, J., Torres, M., Liggitt, H.D., Hockenbery, D.M., Raftery, D., Iritani, B.: Fnip1 Regulates Skeletal Muscle Fiber Type Specification, Fatigue Resistance, and Susceptibility to Muscular Dystrophy. PNAS 112:424-429, 2015. PMCID: PMC4299192.
  5. Nagana Gowda, G.A., Gowda, Y.N., Raftery, D.: Expanding the Limits of Human Blood Metabolite Quantitation using NMR Spectroscopy. Anal. Chem. 87:706-715, 2015. PMCID: PMC4287831.
  6. Emwas, A.-H., Luchinat, C., Turano, P., Tenori, L., Roy, R., Salek, R.M., Ryan, D., Merzaban, J.S., Kaddurah-Daouk, R., Zeri, A.C., Nagana Gowda, G.A., Raftery, D., Wang, Y., Brennan, L., Wishart, D.S.: Standardizing the Experimental Conditions for using Urine in NMR-Based Metabolomic Studies with a Particular Focus on Diagnostic Studies: a Review, Metabolomics 11:872-894, 2015. PMCID: PMC4475544.
  7. Chandrasekaran, S., Rittschof, C.C., Djukovic, D., Gu, H., Raftery, D., Price, N.D., Robinson, G.E.: Aggression is Associated with Aerobic Glycolysis in the Honey Bee Brain, Genes Brain Behav. 14:158-166, 2015. PMCID: PMC4449359.
  8. Gu, H., Du, J., Carnevale Neto, F., Turner, S., Chiorean, E.G., Raftery, D.: Metabolomics Method to Comprehensively Analyze Amino Acids in Different Domains, The Analyst 140:2726-2734, 2015. PMCID: PMC4380628.
  9. Srinivasan, S., Morgan, M.T., Fiedler, T.L., Djukovic, D., Hoffman, N.G., Raftery, D., Marrazzo, J.M., Fredricks, D.N., Metabolic Signatures of Bacterial Vaginosis. mBio, 6:300204-15, 2015. PMCID: PMC4453549.
  10. Nagana Gowda, G.A., Gowda, Y.N., Raftery, D: Massive Glutamine Cyclization to Pyroglutamic Acid in Human Serum Discovered Using NMR Spectroscopy. Anal. Chem, 87:3800-3805, 2015. PCMID: PMC4479397.
  11. Sood, R.F., Gu, H., Djukovic, D., Deng, L., Ga, M., Muffley, L.A., Raftery, D., Hocking, A.M.: Targeted Metabolic Profiling Demonstrates an Impaired Metabolic Response to Injury in Wounds of the db/db Mouse Model of Type 2 Diabetes. Wound Repair Regen. 23:423-434, 2015. PMID: 25845676.
  12. Chen, C., Deng, L., Wei, S., Nagana Gowda, G.A., Gu, H., Chiorean, E.G., Abu Zaid, M., Harrison, M., Pekny, J., Loehrer, P., Zhang, D., Zhang, M., Raftery, D.: Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression. J. Prot. Res., 14:2492-2499, 2015. PMCID: PMC4729298.
  13. Barton, S., Navarro, S.L., Buas, M.F., Schwarz, Y., Gu, H., Djukovic, D., Raftery, D., Kratz, M., Neuhouser, M.L., Lampe, J.W.: Targeted Plasma Metabolome Response to Variations in Dietary Glycemic Load in a Randomized, Controlled, Crossover Feeding Trial in Healthy Adults. Food and Function, 6(9):2949-56, 2015. PMCID: PMC4558254.
  14. Zhu, J., Djukovic, D., Deng, L., Gu, H., Himmati, F., Chiorean, E.G., Zaid, M.A., Raftery, D.: Targeted Serum Metabolite Profiling for Colorectal Cancer Progression Monitoring. Anal. Bioanal. Chem., 407:7857-7863, 2015. PMID: 26342311.
  15. Nagana Gowda, G.A., Raftery, D.: Can NMR Solve Some Significant Challenges in Metabolomics? J. Magn. Reson. 260:144-160, 2015. PMCID: PMC4646661.
  16. Zheng, W., Tayyari, F., Nagana Gowda, G.A., Raftery, D., McLamore , E.S., Shi, J., Porterfield, D.M., Bequette, B., Donkin, S., Teegarden, D.: Altered Glucose Metabolism in Harvey-ras Transformed MCF10A Cells. Mol Carcinogenesis. 54:111-120, 2015. PMCID: PMC4467525.