2010 – 2014

2014
  1. Dai, D.F., Karunadharma, P.P., Chiao, Y.A., Basisty, N., Crispin D., Hsieh, E.J., Chen, T., Gu, H., Djukovic, D., Raftery, D., Beyer, R.P., MacCoss, M.J., Rabinovitch, P.S.: Altered Proteome Turnover and Remodeling by Subacute Caloric Restriction and Rapamycin Rejuvenate the Aging Heart,Aging Cell, 13:529-539, 2014. PMCID: PMC4040127
  2. Bowers, J., Hughes, E., Skill, M., Maluccio, M., Raftery, D.: Detection of Hepatocellular Carcinoma in Hepatitis C Patients: Biomarker Discovery by LC-MS, J. Chromatogr. B 966:154-162, 2014. NIHMS578902, in process.
  3. Nagana Gowda, G.A., Raftery, D.: Quantitative Metabolites in Protein Precipitated Serum Using NMR Spectroscopy.Anal. Chem. 86:5433-5440, 2014 PMCID: PMC4045235
  4. Zhu, J., Djukovic, D., Deng, L., Gu, H., Himmati, F., Chiorean, E.G., Raftery, D.: Colorectal Cancer Detection using Targeted Serum Metabolic Profiling.J. Proteome Res. 13:4120-4130, 2014.
  5. Owusu-Sarfo, K., Asiago, V.M., Deng, L., Gu, H., Wei, S., Shanaiah, N., Nagana Gowda, G.A., Xi, B., Chiorean, E.G., Raftery, D.: NMR-Based Metabolite Profiling of Pancreatic Cancer, Current Metabolomics, 2:204-212, 2014.
  6. Raftery, D., ed., Mass Spectrometry in Metabolomics: Methods and Protocols, Methods in Molecular Biology, Vol. 1198. Humana Press/Springer Science. (2014). ISBN 978-1-4939-1257-5.
  7. Zhang, S. Raftery, D.: Headspace SPME-GC-MS Metabolomics Analysis of Urinary Organic Compounds (VOCs). In Raftery, D.(eds.): Methods in Molecular Biology. 2014; 1198: 265-72. ISBN 978-1-4939-1257-5.

 


2013 
  1. Gu, H., Nagana Gowda, G.A., Carnevale Neto, F., Opp, M.R., Raftery, D.: RAMSY: Ratio Analysis of Mass Spectrometry to Improve Compound Identification, Anal. Chem. 2013, 19;85(22):10771-9.
  2. Baniasadi, H., Nagana Gowda, G.A., Gu, H., Zeng, A., Zhuang, S., Skill, N., Maluccio, M., Raftery, D.: Targeted Metabolic Profiling of Hepatocellular Carcinoma and Hepatitis C using LC-MS/MSElectrophoresis 34:2910-7, 2013.
  3. Nagana Gowda, G.A., Raftery, D.: Biomarker Discovery and Translation in Metabolomics, Current Metabolomics. 2013, 1 (3), 227-240.
  4. Appiah-Amponsah, E., Owusu-Sarfo, K., Nagana Gowda, G.A., Ye, T., Raftery, D.: Combining Hydrophilic Interaction Chromatography (HILIC) and Isotope Tagging for Off-Line LC-NMR Applications in Metabolite Analysis. Metabolites 3:575-591, 2013.
  5. Tayyari, F., Nagana Gowda, G.A., Gu, H., Raftery, D.: 15N-Cholamine – A Smart Isotope Tag for Combining NMR- and MS-Based Metabolite Profiling. Anal. Chem 85:8715-8721, 2013.
  6. Danijel Djukovic, G. A. Nagana Gowda and Daniel Raftery, Mass Spectrometry and NMR Spectroscopy-Based Quantitative Metabolomics.Chapter 18 in Proteomic and Metabolomic Approaches to Biomarker Discovery, Elsevier, 2013
  7. Emmanuel Appiah-Amponsah, Kwadwo Owusu-Sarfo, G. A. Nagana Gowda,  Tao Ye, Daniel Raftery. Combining Hydrophilic Interaction Chromatography (HILIC) and Isotope Tagging for Off-Line LC-NMR Applications in Metabolite AnalysisMetabolites  3, 575-591 (2013)
  8. Wei Zheng, Fariba Tayyari, G. A. Nagana Gowda, Daniel Raftery, Eric S. McLamore , Jin Shi, D. Marshall Porterfield, Shawn Donkin, Brian Bequette, Dorothy Teegarden. 1, 25 Dihydroxyvitamin D Regulation of Glucose Metabolism in Harvey-ras Transformed MCF10A Human Breast Epithelial Cells.Journal of Steroid Biology and Molecular Biology, 138:81-89 (2013)
  9. Rapid separation and quantitation of curcuminoids combining pseudo two dimensional liquid flash chromatography and NMR spectroscopyG. K. Jayaprakasha, G.A. Nagana Gowda, Sixto Marquez and Bhimanagouda S. Patil, Journal of Chromatography B Analyt Technol Biomed Life Sci. 2013 Oct 15;937:25-32.
  10. Seo, J.B., G. A. Nagana Gowda, and D.S. Koh.  Apoptotic damage of pancreatic ductal epithelia by alcohol and its rescue by an antioxidant.PLoS One. 2013 8(11):e81893.
  11. Highly Efficient Methane Biocatalysis Revealed in a Methanotrophic BacteriumM. G. Kalyuzhnaya, S. Yang, O.N. Rozova, N.E.Smalley, J. Clubb, A. Lamb, G. A. Nagana Gowda, D. Raftery, F. Bringel, S. Vuilleumier, Y.A. Trotsenko, D. Beck, V.N. Khmelenina, M.E. Lidstrom, Nature Communications,4:2785, 1-7 (2013)

 


2012
  1. Zhang, S., Liu, L., Steffen, D., Ye T., Raftery, D.: Metabolic Profiling of Gender: SPME/GC-MS and 1H NMR Analysis of Urine.Metabolomics 8:323-334, 2012.
  2. Liu, L., Mo, H., Wei, S., Raftery, D.: Quantitative Analysis of Urea in Human Urine and Serum by 1H Nuclear Magnetic Resonance. Analyst 137:595-600, 2012.
  3. Zhang, J., Bowers, J., Liu, L., Wei, S., Nagana Gowda, G.A., Hammoud, Z., Raftery, D.: Esophageal Cancer Metabolite Biomarkers Detected by LC-MS and NMR Methods.PlosOne. 7:e30181, 2012. PMCID: PMC3264576
  4. Ye, T., Zheng, C., Zhang, S., Nagana Gowda, G.A., Vitek, O., Raftery, D.: “Add to Subtract”: A Simple Method to Remove Complex Background Signals from the 1H Nuclear Magnetic Resonance Spectra of Mixtures, Analytical Chemistry 84:994-1002, 2012. PMCID: PMC3282557
  5. Thornton, J.M., Raftery, D.: Efficient Photocatalytic Hydrogen Production by Platinum-Loaded Carbon-Doped Cadmium Indate Nanoparticles.ACS Appl. Mater. Interfaces 4:2426-2431, 2012.
  6. Blount, J.W., Ferruzzi, M., Raftery D., Pasinetti, G.M., Dixon, R.A.: Enzymatic Synthesis of Substituted Epicatechins for Bioactivity Studies in Neurological Disorders.Biochem. Biophys. Res. Comm. 417:457-461, 2012.
  7. Wang, J., Ferruzzi, M.G., Ho, L., Blount, J., Janle, E.M., Gong, B., Pan, Y., Nagana Gowda, G.A., Raftery, D., Arrieta-Cruz, I., Sharma, V., Cooper, B., Lobo, J., Simon, J., Zhang, C., Cheng, A., Qian, X., Ono, K., Teplow, D., Pavlides, C., Dixon, R., and Pasinetti G.: Brain-Targeted Proanthocyanidin Metabolites for Alzheimer’s Disease Treatment.J. Neuroscience 32:5144-5150, 2012.  PMCID: PMC3348654
  8. Wei, S., Suryani, Y., Nagana Gowda, G.A., Skill, N., Maluccio, M., Raftery, D.: Differentiating Hepatocellular Carcinoma from Hepatitis C Using Metabolite Profiling.Metabolites 2:701-716, 2012.
  9. Wei, S., Liu, L., Zhang, J., Bowers, J., Nagana Gowda, G.A., Seeger, H., Fehm, T., Neubauer, H.J., Vogel, U., Clare, S.E., Raftery, D.: Metabolomics Approach for Predicting Response to Neoadjuvant Chemotherapy for Breast Cancer.Mol. Oncol.  Epub Oct. 25, 2012 PMID 23142658.
  10. Zhang, J., Wei, S., Liu, L., Gowda, G.A.N., Bonney, P., Stewart, J., Knapp, D.W., Raftery, D.: NMR-based metabolomics study of canine bladder cancer.Biochim. Biophys. Acta 1822: 1807-14, 2012.
  11. Gowda, G.A.N., Shanaiah, N., Raftery D.: Isotope enhanced approaches in metabolomics.Adv. Exp. Med. Biol. 992:147-64, 2012. PMID: 23076583.
  12. Gu, H., Gowda, G.A.N., Raftery, D.: Metabolic Profiling: are we en route to better diagnostic tests for cancer?Future Oncol. 1207-10, 2012. PMID: 23130920

 


2011
  1. Gu, H., Pan, Z., Xi, B., Asiago, V.M., Musselman, B., Raftery, D.: Principal Component Directed Partial Least Squares Analysis for Combining NMR and MS Data in Metabolomics: Application to the Detection of Breast Cancer.Anal. Chim. Acta, 686:57-63, 2011. PMCID: PMC3040422
  2. Zhang, J., Liu, L., Wei, S., Nagana Gowda, G.A., Hammoud, Z., Kessler, K.A., Raftery, D.: Metabolomics Study of Esophageal Adenocarcinoma.J. Thoracic Cardiovas. Surg. 141:469-75, 2011.
  3. Sun, Y., Thornton, J.M., Morris, N.A., Rajpura, R., Henkes, S., Raftery, D.: Photoelectrochemical Evaluation of Undoped and C-doped CdIn2O4Thin Film Electrodes.Int. J. Hydrogen Energy 36:2785-2793, 2011.
  4. Sandusky, P., Appiah-Amponsah, E., Raftery, D.: Use of Optimized 1D TOCSY NMR for Improved Quantitation and Metabolomic Analysis of BiofluidsJ. Biomol. NMR 49:281-90, 2011.
  5. Zheng, C., Zheng, S., Ragg, S., Raftery, D., Vitek, O.: Identification and Quantification of Metabolites in 1H NMR Spectra by Bayesian Model Selection.Bioinformatics 27:1637-44, 2011. PMCID: PMC3106181
  6. Mo, H., Harwood, J.S., Raftery, D.: NMR Quantitation: Influence of RF Inhomogeneity.Magn. Reson. Chem49:655-658, 2011.
  7. Wei, S., Zhang, J., Liu, L., Ye, T., Nagana Gowda, G.A., Tayyari, F., Raftery, D.: Ratio Analysis NMR Spectroscopy (RANSY) for Selective Metabolite Identification in Complex Samples.Anal. Chem. 83:7616-7623, 2011. PMCID: PMC3193582

 


2010
  1. Kc, R., Henry, I.D., Park, G.H.J., Raftery, D.: New Solenoidal Microcoil NMR Probe Using Zero-Susceptibility Wire.Concepts Magn. Reson.B 37B:13-19, 2010. PMCID: PMC2826978
  2. Mo, H., Harwood, J., Raftery, D.: Receiver Gain Function: The Actual NMR Receiver Gain.Magn. Reson. Chem.48:235-238, 2010. PMCID: PMC3071559
  3. Kc, R., Gowda, Y.N., Djukovic, D., Henry, I.D., Park, G.H.J., Raftery, D.: Susceptibility-matched Plugs for Microcoil NMR Probes.J. Magn. Reson. 205:63‑68, 2010.  PMCID: PMC2891982
  4. Ye, T., Zhang, S., Mo, H., Tayyari, F., Gowda, G.A.N., Raftery, D.: 13C-Formylation for Improved Nuclear Magnetic Resonance Profiling of Amino Metabolites in Biofluids. Anal. Chem. 82:2303-2309, 2010. PMCID: PMC2837761
  5. Zhang, S., Gowda, G.A.N., Ye, T., Raftery, D.: Advances in NMR-Based Biofluid Analysis and Metabolite Profiling.Analyst 135:1490-1498, 2010.
  6. Lanza, I.R., Zhang, S., Ward, L.E., Karakelides, H., Raftery, D., Nair, S.: Quantitative Metabolomics by 1H-NMR and LC-MS/MS Confirms Altered Metabolic Pathways in Diabetes.PLoS ONE 5:1-10, 2010. PMCID: PMC2866659
  7. Djukovic, D., Baniasadi, H.R., Kc, R., Hammoud, Z., Raftery, D.: Targeted Serum Metabolite Profiling of Nucleosides in Esophageal Adenocarcinoma.Rapid Comm. Mass Spectrom. 24:3057-62, 2010.
  8. Nagana Gowda, G.A., Tayyari, F., Ye, T., Suryani, Y., Wei, S., Shanaiah, N., Raftery, D.: Quantitative Analysis of Blood Plasma Metabolites Using Isotope Enhanced NMR Methods.Anal. Chem. 82:8983-90, 2010. PMCID: PMC3065653
  9. Asiago, V.M., Alvarado, L.Z., Shanaiah, N., Nagana Gowda, G.A., Owusu-Sarfo, K., Ballas, R., Raftery, D.: Early Detection of Recurrent Breast Cancer Using Metabolite Profiling.Cancer Res. 70:8309-18, 2010. PMCID: PMC2995269
  10. Mo, H., Harwood, J.S., Raftery, D.: A Quick Diagnostic Test for NMR Receiver Gain Compression.Magn Reson Chem. 48:782-6, 2010. PMCID: PMC2943987